Debian Med released with Debian 5.0 (Lenny)

The recent release of Debian 5.0 (Lenny) contains a lot of medical software which is interesting for several tasks in medical work. The strongest part remains the support of microbiological applications but also medical imaging and the practice management GNUmed are included now.

Perhaps an article on The Register might be interesting as well.
What is new for Debian Med in Lenny?

February 15th, 2009

We are proud to announce the first release of Debian Med together with
Lenny, the new stable version of the
Debian operating system.

The Debian Med project
continues its healthy growth, which is reflected in a continuous increase of packages for medical care and an increasing number of people who are actively
working on the project. Our current work is concentrated in our three main
areas of activity: imaging, bioinformatics, and medical practice. During this
release cycle, we developed new dynamic web pages

to present the development status of our project.

The so called task
might be the most interesting entry point for users or
potential users of Debian Med because they reflect the current
status of our work regarding integration of medical software into
Debian. The task
provide a list of ready to install medical software and
moreover a contact point for users who might need a certain program
which is not yet available. If something is missing on the list
of available software users might ask us for missing things or can
easily obtain the status of work on a project.

In addition to the user oriented tasks pages we also generate
pages which show the bugs concerning the medical software inside
Debian. The bugs
are a useful tool for Debian Med developers to see immediately
which packages need to be worked on.

Medical imaging

Many new packages were made for programs supporting the DICOM and Nifti formats, that
are important standards in the field of medical imaging: Aeskulap, AMIDE, dinifti, FSLview, ImageJ, PyNIfTi. Thanks to a patch
allowing the use of MySQL 5, we could continue to distribute CTN in Lenny. CTSIM, which depends on an old
version of the WxWidgets library, will not be part of the release, but it
will nevertheless stay part of Debian in the unstable section. Once upgraded
to a more recent version of WxWidgets, the Debian Med project will prepare an
official backport.

You can find all the programs for medical imaging in our

Sequence analysis and bioinformatics

This release saw the arrival in Debian of EMBOSS, a very
comprehensive suite of software for sequence analysis, with one of its web
interfaces, EMBOSS
, that you can use locally, on your intranet or on the Internet
after an installation as simple as typing aptitude install

Debian Med now distributes all the major free programs for multiple sequence
alignment. One of them, T-Coffee, can function as
a meta-aligner (M-Coffee), that runs multiple programs and combines
their outputs in a higher-quality alignment. Its author kindly developed a
version that only depends on free software, DM-Coffee, in which Clustal W is substituted
by Kalign.

This first release of Debian Med addresses some very medical field of
structural bioinformatics. The AutoDock suite has arrived
that allows to evaluate metabolites for their affinity to protein receptors,
the basis for in silico drug screening. Debian Med also references further
structural packages that are provided by the Debian Science community like
Gromacs or PyMol.

You can find all the programs for sequence analysis and bioinformatics in our

Diversification of the medical packages.

Debian Med covers a broad area relevant to medicine, with for instance
software for helping people to take care of their health and body (Pondus), software to study
the spread of epidemic diseases (Epigrass), and programs
for organizing the professional work of medical doctors
(GNUMed). The
is not yet available as a stable Debian package, but can be found
in our experimental section for those who would like to help by testing.

You can find all the programs for health and medicine in our
med-epi, and

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